Atlas landmarks

Developed for northstar.

Files are in loom format.

For programmatic access, see the TSV table.

Homo sapiens

Brain atlas by Darmanis et al. 2015
- Technology: SmartSeq2
- full: averages ⎮ subsamples
- without fetal data: averages ⎮ subsamples
Pancreas ageing atlas by Enge et al. 2017
- Technology: SmartSeq2
- full: averages ⎮ subsamples
- reannotated: averages ⎮ subsamples
Pancreas atlas by Lawlor et al. 2016
- Technology: Fluidigm C1
- no diabetes patients: averages ⎮ subsamples
Pancreas atlas by Baron et al. 2016
- Technology: InDrop
- no diabetes patients: averages ⎮ subsamples
Blood (peripheral) by Zanini, Robinson et al. 2018
- Technology: SmartSeq2
- healthy controls: averages ⎮ subsamples
B cells (peripheral blood) by Croote et al. 2019
- Technology: SmartSeq2
- half (higher quality): averages ⎮ subsamples
Liver atlas by Aizarani et al. 2019
- Technology: mCEL-Seq2
- all identifiable clusters: averages ⎮ subsamples
Intestine (colon) atlas by Smillie et al. 2019
- Technology: 10X Genomics 3’
- healthy controls: averages ⎮ subsamples

Tabula muris by Tabula Muris Consortium 2018
- Technology: SmartSeq2
  - Aorta: averages ⎮ subsamples
  - Bladder: averages ⎮ subsamples
  - Brain: averages ⎮ subsamples
  - Diaphragm: averages ⎮ subsamples
  - Fat: averages ⎮ subsamples
  - Heart: averages ⎮ subsamples
  - Intestine: averages ⎮ subsamples
  - Kidney: averages ⎮ susamples
  - Liver: averages ⎮ subsamples
  - Lung: averages ⎮ susamples
  - Mammary gland: averages ⎮ subsamples
  - Marrow: averages ⎮ subsamples
  - Muscle (skeletal): averages ⎮ subsamples
  - Pancreas: averages ⎮ subsamples
  - Skin: averages ⎮ subsamples
  - Spleen: averages ⎮ subsamples
  - Thymus: averages ⎮ subsamples
  - Tongue: averages ⎮ subsamples
  - Trachea: averages ⎮ subsamples
Brain atlas by Zeisel et al. 2018 (mousebrain.org)
- Technology: 10X Genomics 3’
- full: averages
- Note: this dataset has many neuronal types and is therefore quite large.